Package: GeneSelectR 0.0.0.9000
GeneSelectR: Comprehensive Feature Selection Worfkflow for Bulk RNAseq Datasets
GeneSelectR is a versatile R package designed for efficient RNA sequencing data analysis. Its key innovation lies in the seamless integration of the Python sklearn machine learning framework with R-based bioinformatics tools. This integration enables GeneSelectR to perform robust ML-driven feature selection while simultaneously leveraging the power of Gene Ontology (GO) enrichment and semantic similarity analyses. By combining these diverse methodologies, GeneSelectR offers a comprehensive workflow that optimizes both the computational aspects of ML and the biological insights afforded by advanced bioinformatics analyses. Ideal for researchers in bioinformatics, GeneSelectR stands out as a unique tool for analyzing complex RNAseq datasets with enhanced precision and relevance.
Authors:
GeneSelectR_0.0.0.9000.tar.gz
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GeneSelectR.pdf |GeneSelectR.html✨
GeneSelectR/json (API)
# Install 'GeneSelectR' in R: |
install.packages('GeneSelectR', repos = c('https://dzhakparov.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/dzhakparov/geneselectr/issues
Last updated 6 months agofrom:4e7dfd0e15. Checks:OK: 2 NOTE: 5. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 23 2024 |
R-4.5-win | NOTE | Nov 23 2024 |
R-4.5-linux | NOTE | Nov 23 2024 |
R-4.4-win | NOTE | Nov 23 2024 |
R-4.4-mac | NOTE | Nov 23 2024 |
R-4.3-win | OK | Nov 23 2024 |
R-4.3-mac | NOTE | Nov 23 2024 |
Exports:annotate_gene_listscalculate_overlap_coefficientscalculate_permutation_feature_importancecompute_GO_child_term_metricsconfigure_environmentdefine_sklearn_modulesevaluate_test_metricsGeneSelectRget_feature_importancesGO_enrichment_analysisimport_python_packagesinstall_python_packagesperform_grid_searchpipeline_to_listplot_feature_importanceplot_metricsplot_overlap_heatmapsplot_upsetrun_multiple_simplifyGOrun_simplify_enrichmentset_reticulate_pythonskip_if_no_modulessplit_data
Dependencies:beeswarmbitopsbriocallrcaToolsclicolorspacecowplotcpp11crayondescdiffobjdigestdplyrevaluatefansifarverfsgenericsggplot2ggrepelgluegplotsgtablegtoolshereisobandjsonliteKernSmoothlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepheatmappillarpkgbuildpkgconfigpkgloadplotwidgetsplyrpngpraiseprocessxpspurrrR6rappdirsRColorBrewerRcppRcppTOMLreshape2reticulaterlangrprojrootscalesstringistringrtagcloudtestthattibbletidyrtidyselecttmodutf8vctrsviridisLitewaldowithrXML